locan.visualize.render_napari.utilities.select_by_drawing_napari#

locan.visualize.render_napari.utilities.select_by_drawing_napari(locdata, napari_run=True, **kwargs)[source]#

Select region of interest from rendered image by drawing rois in napari.

Rois will be created from shapes in napari.viewer.layers[‘Shapes’].

Parameters:

  • locdata (LocData) – The localization data from which to select localization data.

  • napari_run (bool) – If True napari.run is called (set to False for testing).

  • kwargs (Any) – Other parameters passed to render_2d_napari().

Return type:

list[Roi]

See also

locan.scripts.rois()

script for drawing rois