locan.locan_io.locdata.smlm_io

File input/output for localization data in SMLM files.

File specifications are provided at https://github.com/imodpasteur/smlm-file-format/blob/master/specification.md.

Code is adapted from https://github.com/imodpasteur/smlm-file-format/blob/master/implementations/Python/smlm_file.py. (MIT license)

Functions

load_SMLM_file(path[, nrows, convert])	Load data from a SMLM single-molecule localization file.
load_SMLM_header(path)	Read header (manifest) from a SMLM single-molecule localization file and identify column names.
load_SMLM_manifest(path)	Read manifest.json (version 0.2) from a SMLM single-molecule localization (zip) file.
manifest_file_info_from_locdata(locdata)	Prepare a manifest["file_info"] protobuf from locdata.
manifest_format_from_locdata(locdata)	Prepare a manifest["format"] protobuf from locdata.
manifest_from_locdata(locdata[, ...])	Prepare a manifest protobuf from locdata.
save_SMLM(locdata, path[, manifest])	Save LocData attributes in a SMLM single-molecule localization (zip) file with manifest.json (version 0.2).