locan.data.regions.region.Region3D

class locan.data.regions.region.Region3D[source]

Bases: Region

Abstract Region class to define the interface for 3-dimensional Region classes.

Methods

__init__()

as_artist([origin])

Matplotlib patch object for this region (e.g. matplotlib.patches.Ellipse).

buffer(distance, **kwargs)

Extend the region perpendicular by a distance.

contains(points)

Return list of indices for all points that are inside the region of interest.

from_intervals(intervals)

Constructor for instantiating a line or axis-oriented, box-like Region from list of (min, max) bounds.

from_open3d(open3d_object)

Constructor for instantiating Region from open3d object.

intersection(other)

Returns a region representing the intersection of this region with other.

plot([ax])

Provide plot of region as matplotlib.axes.Axes object.

symmetric_difference(other)

Returns the union of the two regions minus any areas contained in the intersection of the two regions.

union(other)

Returns a region representing the union of this region with other.

Attributes

bounding_box

A region describing the minimum axis-aligned bounding box that encloses the original region.

bounds

Region bounds min_x, min_y, ..., max_x, max_y, .

centroid

Point coordinates for region centroid.

dimension

The region dimension.

elongation

A measure between 0 and 1 for how elongated the object is.

extent

The extent (max_x - min_x), (max_y - min_y), .

intervals

Provide bounds in a tuple (min, max) arrangement.

isoperimetric_quotient

Ratio of the volume of a region to the volume of a ball with the same surface:

max_distance

The maximum distance between any two points within the region.

radial_distance

Average of all absolute distances between vertices and centroid.

region_measure

Region measure, i.e. area (for 2d) or volume (for 3d).

subregion_measure

Measure of the sub-dimensional region, i.e. perimeter length (for 2d) or surface area (for 3d).

vertices

0 - dimensional elements that define the region; also called points.

abstractmethod as_artist(origin=(0, 0, 0), **kwargs)[source]

Matplotlib patch object for this region (e.g. matplotlib.patches.Ellipse).

Parameters:
  • origin (Union[_Buffer, _SupportsArray[dtype[Any]], _NestedSequence[_SupportsArray[dtype[Any]]], bool, int, float, complex, str, bytes, _NestedSequence[bool | int | float | complex | str | bytes]]) – The (x, y, z) pixel position of the origin of the displayed image. Default is (0, 0, 0).

  • kwargs (Any) – Other parameters passed to the matplotlib.patches object.

Returns:

Matplotlib patch for the specified region.

Return type:

matplotlib.patches.Patch

property dimension: int

The region dimension.

Return type:

int | None

static from_open3d(open3d_object)[source]

Constructor for instantiating Region from open3d object.

Note

This function is deprecated.

Parameters:

open3d_object (AxisAlignedBoundingBox | OrientedBoundingBox) – Geometric object to be converted into Region

Return type:

AxisOrientedCuboid | Cuboid | EmptyRegion

intersection(other)[source]

Returns a region representing the intersection of this region with other.

Parameters:

other (Region) – Other region

Return type:

Region

property isoperimetric_quotient: float

Ratio of the volume of a region to the volume of a ball with the same surface:

isoperimetric_quotient = 36 * pi * volume^2 / surface^3.

Sometimes called circularity in 2d and sphericity in 3d.

Return type:

float

plot(ax=None, **kwargs)[source]

Provide plot of region as matplotlib.axes.Axes object.

Parameters:
  • ax (Axes | None) – The axes on which to show the image

  • kwargs (Any) – Other parameters passed to the matplotlib.patches object.

Returns:

Axes object with the plot.

Return type:

matplotlib.axes.Axes

symmetric_difference(other)[source]

Returns the union of the two regions minus any areas contained in the intersection of the two regions.

Parameters:

other (Region) – Other region

Return type:

Region

union(other)[source]

Returns a region representing the union of this region with other.

Parameters:

other (Region) – Other region

Return type:

Region