Hide navigation sidebar

Hide table of contents sidebar

Toggle site navigation sidebar

Locan 0.20.0.dev41+g755b969

Toggle table of contents sidebar

Locan 0.20.0.dev41+g755b969

Getting started

Installation
Tutorials
Toggle navigation of Tutorials
Docker

User Guide

Package Design
Toggle navigation of Package Design
Command-line interface
Colormaps
User Interface

API Documentation

API Reference
Toggle navigation of API Reference
- locan.analysis
  Toggle navigation of locan.analysis
  - locan.analysis.accumulation_analysis
    Toggle navigation of locan.analysis.accumulation_analysis
    - locan.analysis.accumulation_analysis.AccumulationClusterCheck
  - locan.analysis.blinking
    Toggle navigation of locan.analysis.blinking
    - locan.analysis.blinking.BlinkStatistics
  - locan.analysis.cbc
    Toggle navigation of locan.analysis.cbc
    - locan.analysis.cbc.CoordinateBasedColocalization
  - locan.analysis.convex_hull_expectation
    Toggle navigation of locan.analysis.convex_hull_expectation
  - locan.analysis.drift
    Toggle navigation of locan.analysis.drift
  - locan.analysis.grouped_property_expectation
    Toggle navigation of locan.analysis.grouped_property_expectation
    - locan.analysis.grouped_property_expectation.GroupedPropertyExpectation
    - locan.analysis.grouped_property_expectation.GroupedPropertyExpectationResults
  - locan.analysis.localization_precision
    Toggle navigation of locan.analysis.localization_precision
  - locan.analysis.localization_property
    Toggle navigation of locan.analysis.localization_property
    - locan.analysis.localization_property.LocalizationProperty
  - locan.analysis.localization_property_2d
    Toggle navigation of locan.analysis.localization_property_2d
    - locan.analysis.localization_property_2d.FitImageResults
    - locan.analysis.localization_property_2d.LocalizationProperty2d
  - locan.analysis.localization_property_correlations
    Toggle navigation of locan.analysis.localization_property_correlations
    - locan.analysis.localization_property_correlations.LocalizationPropertyCorrelations
  - locan.analysis.localizations_per_frame
    Toggle navigation of locan.analysis.localizations_per_frame
    - locan.analysis.localizations_per_frame.LocalizationsPerFrame
  - locan.analysis.nearest_neighbor
    Toggle navigation of locan.analysis.nearest_neighbor
  - locan.analysis.pipeline
    Toggle navigation of locan.analysis.pipeline
    - locan.analysis.pipeline.Pipeline
    - locan.analysis.pipeline.computation_test
  - locan.analysis.position_variance_expectation
    Toggle navigation of locan.analysis.position_variance_expectation
    - locan.analysis.position_variance_expectation.PositionVarianceExpectation
    - locan.analysis.position_variance_expectation.PositionVarianceExpectationResults
  - locan.analysis.ripley
    Toggle navigation of locan.analysis.ripley
  - locan.analysis.subpixel_bias
    Toggle navigation of locan.analysis.subpixel_bias
    - locan.analysis.subpixel_bias.SubpixelBias
  - locan.analysis.uncertainty
    Toggle navigation of locan.analysis.uncertainty
- locan.constants
  Toggle navigation of locan.constants
- locan.configuration
  Toggle navigation of locan.configuration
- locan.data
  Toggle navigation of locan.data
  - locan.data.locdata
    Toggle navigation of locan.data.locdata
    - locan.data.locdata.LocData
  - locan.data.properties
    Toggle navigation of locan.data.properties
    - locan.data.properties.misc
      Toggle navigation of locan.data.properties.misc
    - locan.data.properties.statistics
  - locan.data.hulls
    Toggle navigation of locan.data.hulls
    - locan.data.hulls.hull
      Toggle navigation of locan.data.hulls.hull
    - locan.data.hulls.alpha_shape
      Toggle navigation of locan.data.hulls.alpha_shape
      - locan.data.hulls.alpha_shape.AlphaComplex
      - locan.data.hulls.alpha_shape.AlphaShape
  - locan.data.region
    Toggle navigation of locan.data.region
  - locan.data.region_utils
    Toggle navigation of locan.data.region_utils
  - locan.data.register
    Toggle navigation of locan.data.register
  - locan.data.aggregate
    Toggle navigation of locan.data.aggregate
  - locan.data.filter
    Toggle navigation of locan.data.filter
  - locan.data.transform
    Toggle navigation of locan.data.transform
    - locan.data.transform.bunwarpj
      Toggle navigation of locan.data.transform.bunwarpj
      - locan.data.transform.bunwarpj.bunwarp
    - locan.data.transform.spatial_transformation
      Toggle navigation of locan.data.transform.spatial_transformation
    - locan.data.transform.intensity_transformation
      Toggle navigation of locan.data.transform.intensity_transformation
      - locan.data.transform.intensity_transformation.transform_counts_to_photons
  - locan.data.cluster
    Toggle navigation of locan.data.cluster
    - locan.data.cluster.clustering
      Toggle navigation of locan.data.cluster.clustering
    - locan.data.cluster.utils
      Toggle navigation of locan.data.cluster.utils
      - locan.data.cluster.utils.serial_clustering
  - locan.data.tracking
    Toggle navigation of locan.data.tracking
    - locan.data.tracking.link_locdata
    - locan.data.tracking.track
  - locan.data.metadata_utils
    Toggle navigation of locan.data.metadata_utils
  - locan.data.validation
    Toggle navigation of locan.data.validation
    - locan.data.validation.Collection
- locan.datasets
  Toggle navigation of locan.datasets
  - locan.datasets.load_npc
  - locan.datasets.load_tubulin
- locan.dependencies
  Toggle navigation of locan.dependencies
- locan.gui
  Toggle navigation of locan.gui
  - locan.gui.io
    Toggle navigation of locan.gui.io
    - locan.gui.io.file_dialog
    - locan.gui.io.set_file_path_dialog
- locan.locan_io
  Toggle navigation of locan.locan_io
  - locan.locan_io.files
    Toggle navigation of locan.locan_io.files
    - locan.locan_io.files.Files
  - locan.locan_io.locdata
    Toggle navigation of locan.locan_io.locdata
    - locan.locan_io.locdata.io_locdata
      Toggle navigation of locan.locan_io.locdata.io_locdata
      - locan.locan_io.locdata.io_locdata.load_locdata
      - locan.locan_io.locdata.io_locdata.load_txt_file
    - locan.locan_io.locdata.utilities
      Toggle navigation of locan.locan_io.locdata.utilities
    - locan.locan_io.locdata.rapidstorm_io
      Toggle navigation of locan.locan_io.locdata.rapidstorm_io
    - locan.locan_io.locdata.thunderstorm_io
      Toggle navigation of locan.locan_io.locdata.thunderstorm_io
    - locan.locan_io.locdata.elyra_io
      Toggle navigation of locan.locan_io.locdata.elyra_io
      - locan.locan_io.locdata.elyra_io.load_Elyra_file
      - locan.locan_io.locdata.elyra_io.load_Elyra_header
    - locan.locan_io.locdata.nanoimager_io
      Toggle navigation of locan.locan_io.locdata.nanoimager_io
      - locan.locan_io.locdata.nanoimager_io.load_Nanoimager_file
      - locan.locan_io.locdata.nanoimager_io.load_Nanoimager_header
    - locan.locan_io.locdata.asdf_io
      Toggle navigation of locan.locan_io.locdata.asdf_io
      - locan.locan_io.locdata.asdf_io.load_asdf_file
      - locan.locan_io.locdata.asdf_io.save_asdf
    - locan.locan_io.locdata.smlm_io
      Toggle navigation of locan.locan_io.locdata.smlm_io
    - locan.locan_io.locdata.decode_io
      Toggle navigation of locan.locan_io.locdata.decode_io
      - locan.locan_io.locdata.decode_io.load_decode_file
      - locan.locan_io.locdata.decode_io.load_decode_header
    - locan.locan_io.locdata.smap_io
      Toggle navigation of locan.locan_io.locdata.smap_io
  - locan.locan_io.utilities
    Toggle navigation of locan.locan_io.utilities
    - locan.locan_io.utilities.find_file_upstream
- locan.rois
  Toggle navigation of locan.rois
  - locan.rois.roi
    Toggle navigation of locan.rois.roi
- locan.scripts
  Toggle navigation of locan.scripts
  - locan.scripts.script_check
    Toggle navigation of locan.scripts.script_check
  - locan.scripts.script_rois
    Toggle navigation of locan.scripts.script_rois
    - locan.scripts.script_rois.main
    - locan.scripts.script_rois.sc_draw_roi_napari
  - locan.scripts.script_draw_roi
    Toggle navigation of locan.scripts.script_draw_roi
    - locan.scripts.script_draw_roi.main
    - locan.scripts.script_draw_roi.sc_draw_roi_mpl
  - locan.scripts.script_napari
    Toggle navigation of locan.scripts.script_napari
    - locan.scripts.script_napari.main
    - locan.scripts.script_napari.sc_napari
  - locan.scripts.script_show_versions
    Toggle navigation of locan.scripts.script_show_versions
    - locan.scripts.script_show_versions.main
  - locan.scripts.script_test
    Toggle navigation of locan.scripts.script_test
    - locan.scripts.script_test.main
- locan.simulation
  Toggle navigation of locan.simulation
  - locan.simulation.simulate_locdata
    Toggle navigation of locan.simulation.simulate_locdata
  - locan.simulation.simulate_drift
    Toggle navigation of locan.simulation.simulate_drift
    - locan.simulation.simulate_drift.add_drift
- locan.tests
  Toggle navigation of locan.tests
  - locan.tests.test
- locan.utils
  Toggle navigation of locan.utils
  - locan.utils.miscellaneous
    Toggle navigation of locan.utils.miscellaneous
    - locan.utils.miscellaneous.iterate_2d_array
  - locan.utils.statistics
    Toggle navigation of locan.utils.statistics
  - locan.utils.system_information
    Toggle navigation of locan.utils.system_information
- locan.visualize
  Toggle navigation of locan.visualize
  - locan.visualize.colormap
    Toggle navigation of locan.visualize.colormap
  - locan.visualize.render
    Toggle navigation of locan.visualize.render
    - locan.visualize.render.render_2d
    - locan.visualize.render.render_3d
  - locan.visualize.render_mpl
    Toggle navigation of locan.visualize.render_mpl
    - locan.visualize.render_mpl.render2d
      Toggle navigation of locan.visualize.render_mpl.render2d
    - locan.visualize.render_mpl.render3d
      Toggle navigation of locan.visualize.render_mpl.render3d
      - locan.visualize.render_mpl.render3d.scatter_3d_mpl
  - locan.visualize.render_napari
    Toggle navigation of locan.visualize.render_napari
    - locan.visualize.render_napari.render2d
      Toggle navigation of locan.visualize.render_napari.render2d
    - locan.visualize.render_napari.render3d
      Toggle navigation of locan.visualize.render_napari.render3d
    - locan.visualize.render_napari.utilities
      Toggle navigation of locan.visualize.render_napari.utilities
  - locan.visualize.transform
    Toggle navigation of locan.visualize.transform

Project Details

Changelog
Contributions
License
Other Licenses

Developer Guide

Documentation
Development

v: latest

Versions: latest; stable

Downloads: pdf; epub

On Read the Docs: Project Home; Builds

Toggle table of contents sidebar

locan.data.hulls#

Hull objects of localization data.

Submodules:#

`hull`	Hull objects of localization data.
`alpha_shape`	Alpha shape

locan.data.hulls.hull

locan.data.properties.statistics

Copyright © 2018-2024, Locan Developers

Made with Sphinx and @pradyunsg's Furo

On this page

locan.data.hulls
- Submodules: