locan.scripts.script_draw_roi

Define regions of interest with matplotlib and save as roi files.

With this script you can choose a file name, open the localization file and draw a rectangular region of interest. Within the matplotlib image draw a rectange, type ‘+’ to add the roi to the list, then type ‘q’ to quit. The roi is then saved as _roi.yaml file.

To run the script:

locan draw_roi_mpl -f <file> -t <file type> -i <roi file indicator> -r <region type>

Try for instance:

locan draw_roi_mpl -f "locan/tests/test_data/five_blobs.txt" -t 1 -i "_roi" -r "ellipse"

See also

locan.rois.select_by_drawing_mpl

Functions

main([args])	rtype: None
sc_draw_roi_mpl([file_path, file_type, ...])	Define regions of interest by drawing a boundary.