locan.analysis.pair_distances

Pairwise distance distribution analysis.

The pairwise distance distribution p(r) - as derived from a histogram of pairwise distances n_AB(r) - represents the probability distribution function to find for any localization from A another localization from B at distance r.

\[p(r) &= n(r) \ n_distances\]

See also

RadialDistribution

References

[1]

Sengupta, P., Jovanovic-Talisman, T., Skoko, D. et al., Probing protein heterogeneity in the plasma membrane using PALM and pair correlation analysis. Nat Methods 8, 969–975 (2011), https://doi.org/10.1038/nmeth.1704

[2]

J. Schnitzbauer, Y. Wang, S. Zhao, M. Bakalar, T. Nuwal, B. Chen, B. Huang, Correlation analysis framework for localization-based superresolution microscopy. Proc. Natl. Acad. Sci. U.S.A. 115 (13) 3219-3224 (2018), https://doi.org/10.1073/pnas.1711314115

[3]

Bohrer, C.H., Yang, X., Thakur, S. et al. A pairwise distance distribution correction (DDC) algorithm to eliminate blinking-caused artifacts in SMLM. Nat Methods 18, 669–677 (2021). https://doi.org/10.1038/s41592-021-01154-y

Classes

PairDistances([meta])

Compute the pairwise distances within data or the pairwise distances between data and other_data.